STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HSM_1192KEGG: tde:TDE0245 ABC transporter, ATP-binding/permease protein. (151 aa)    
Predicted Functional Partners:
HSM_1193
ABC-type cobalt transport system ATPase component-like protein; KEGG: tde:TDE0244 ABC transporter, ATP-binding/permease protein.
 
   
 0.921
HSM_1191
PFAM: regulatory protein TetR; KEGG: tde:TDE0246 transcriptional regulator, TetR family.
 
   
 0.910
HSM_1190
PFAM: Relaxase/mobilization nuclease family protein; KEGG: spi:MGAS10750_Spy1708 relaxase.
 
     0.833
HSM_0423
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hso:HS_1588 ABC transporter, ATP-binding/permease protein.
 
 0.756
HSM_1184
KEGG: spi:MGAS10750_Spy1699 hypothetical protein.
  
     0.737
HSM_1183
KEGG: spi:MGAS10750_Spy1685 hypothetical protein.
  
     0.713
atpD
ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.
    
 
 0.620
atpA
ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family.
    
   0.603
atpG
ATP synthase F1, gamma subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.
   
   0.602
atpC
ATP synthase F1, epsilon subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.
   
   0.593
Your Current Organism:
Histophilus somni
NCBI taxonomy Id: 228400
Other names: H. somni 2336, Haemophilus somnus 2336, Histophilus somni 2336, Histophilus somni str. 2336
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