Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
HSM_1237PFAM: carbohydrate kinase FGGY; KEGG: hso:HS_0770 L-xylulose kinase; Belongs to the FGGY kinase family. (484 aa)    
Predicted Functional Partners:
HSM_1238
PFAM: Orotidine 5'-phosphate decarboxylase; KEGG: hso:HS_0771 3-hexulose-6-phosphate synthase.
 
  
  0.979
HSM_1239
TIGRFAM: putative hexulose-6-phosphate isomerase; PFAM: Xylose isomerase domain protein TIM barrel; KEGG: hso:HS_0772 hexulose-6-phosphate isomerase.
 
  
  0.979
HSM_1226
PFAM: Malate/L-lactate dehydrogenase; KEGG: hso:HS_0759 malate dehydrogenase; Belongs to the LDH2/MDH2 oxidoreductase family.
 
  
  0.928
HSM_1240
TIGRFAM: L-ribulose-5-phosphate 4-epimerase; PFAM: class II aldolase/adducin family protein; KEGG: hso:HS_0773 L-ribulose-5-phosphate 4-epimerase.
  
    0.767
HSM_1943
Transcriptional regulator, DeoR family; PFAM: putative sugar-binding domain protein; KEGG: hso:HS_0050 transcriptional regulator, possible sorbitol operon regulator.
 
  
 0.607
HSM_1236
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: hso:HS_0769 ribose transport system permease.
  
    0.525
HSM_1235
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hso:HS_0768 ribose ABC transporter, ATP-binding protein.
       0.519
HSM_1947
KEGG: hso:HS_0054 ABC transporter, solute-binding, sugar transport.
  
    0.489
HSM_1949
PFAM: Antibiotic biosynthesis monooxygenase; KEGG: hso:HS_0056 hypothetical protein.
 
  
 0.451
HSM_1009
TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: hso:HS_1098 phosphocarrier protein HPr.
    
   0.447
Your Current Organism:
Histophilus somni
NCBI taxonomy Id: 228400
Other names: H. somni 2336, Haemophilus somnus 2336, Histophilus somni 2336, Histophilus somni str. 2336
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