STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HSM_1257PFAM: YadA domain protein; Haemagluttinin domain protein; Hep_Hag repeat-containing protein; KEGG: hso:HS_0790 possible large adhesin. (4656 aa)    
Predicted Functional Partners:
HSM_0750
TIGRFAM: TonB-dependent lactoferrin and transferrin receptors; TonB-dependent hemoglobin/transferrin/lactoferrin family receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: hso:HS_0449 transferrin-binding protein A.
  
     0.571
HSM_1962
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: hso:HS_0069 iron-regulated outer membrane protein.
  
     0.508
HSM_1344
PFAM: protein of unknown function DUF6 transmembrane; KEGG: hso:HS_0867 possible permease.
  
     0.476
HSM_1647
KEGG: msu:MS1163 FhaB protein.
  
     0.415
HSM_0270
KEGG: nme:NMB1768 hemagglutinin/hemolysin-related protein.
  
     0.412
HSM_0272
KEGG: msu:MS1162 hypothetical protein.
  
     0.400
Your Current Organism:
Histophilus somni
NCBI taxonomy Id: 228400
Other names: H. somni 2336, Haemophilus somnus 2336, Histophilus somni 2336, Histophilus somni str. 2336
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.