Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
HSM_1404 | HSM_1405 | HSM_1404 | HSM_1405 | TIGRFAM: 2,4-diaminobutyrate 4-transaminase; PFAM: aminotransferase class-III; KEGG: hso:HS_0926 diaminobutyrate--2-oxoglutarate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | PFAM: Pyridoxal-dependent decarboxylase; KEGG: hso:HS_0927 L-2,4-diaminobutyrate decarboxylase. | 0.993 |
HSM_1405 | HSM_1404 | HSM_1405 | HSM_1404 | PFAM: Pyridoxal-dependent decarboxylase; KEGG: hso:HS_0927 L-2,4-diaminobutyrate decarboxylase. | TIGRFAM: 2,4-diaminobutyrate 4-transaminase; PFAM: aminotransferase class-III; KEGG: hso:HS_0926 diaminobutyrate--2-oxoglutarate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | 0.993 |
HSM_1405 | potE | HSM_1405 | HSM_0437 | PFAM: Pyridoxal-dependent decarboxylase; KEGG: hso:HS_0927 L-2,4-diaminobutyrate decarboxylase. | Amino acid permease-associated region; Catalyzes both the uptake and excretion of putrescine. The uptake of putrescine is dependent on the membrane potential and the excretion involves putrescine-ornithine antiporter activity. Belongs to the amino acid-polyamine-organocation (APC) superfamily. Basic amino acid/polyamine antiporter (APA) (TC 2.A.3.2) family. | 0.440 |
potE | HSM_1405 | HSM_0437 | HSM_1405 | Amino acid permease-associated region; Catalyzes both the uptake and excretion of putrescine. The uptake of putrescine is dependent on the membrane potential and the excretion involves putrescine-ornithine antiporter activity. Belongs to the amino acid-polyamine-organocation (APC) superfamily. Basic amino acid/polyamine antiporter (APA) (TC 2.A.3.2) family. | PFAM: Pyridoxal-dependent decarboxylase; KEGG: hso:HS_0927 L-2,4-diaminobutyrate decarboxylase. | 0.440 |