STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HSM_1739KEGG: msu:MS2120 hypothetical protein. (366 aa)    
Predicted Functional Partners:
HSM_1738
PFAM: protein of unknown function DUF1304; KEGG: nmc:NMC0467 hypothetical protein.
 
     0.567
HSM_1740
PFAM: cation efflux protein; KEGG: pmu:PM1942 unknown.
     
 0.539
HSM_0207
PFAM: NAD(P)H dehydrogenase (quinone); KEGG: hso:HS_0336 NAD(P)H dehydrogenase (quinone).
  
     0.504
HSM_1737
Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; KEGG: msu:MS2146 MarR protein.
     
 0.492
HSM_1736
PFAM: small multidrug resistance protein; KEGG: nme:NMB0393 multidrug resistance protein.
     
 0.456
HSM_1741
Putative transcriptional regulator, MerR family; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: pmu:PM1941 transcriptional regulator, merR family, putative.
     
 0.450
Your Current Organism:
Histophilus somni
NCBI taxonomy Id: 228400
Other names: H. somni 2336, Haemophilus somnus 2336, Histophilus somni 2336, Histophilus somni str. 2336
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.