Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
HSM_1908Kmt1; KEGG: pmu:PM1361 kmt1. (599 aa)    
Predicted Functional Partners:
HSM_1907
PFAM: cyclase family protein; KEGG: pmu:PM1362 hypothetical T. maritima.
 
   
 0.965
HSM_1903
PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: hso:HS_0012 3-hydroxyisobutyrate dehydrogenase family protein.
 
   
 0.913
HSM_1906
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: hso:HS_0015 possible hydroxypyruvate isomerase; Belongs to the hyi family.
 
   
 0.909
HSM_0884
KEGG: hso:HS_1402 hypothetical protein.
  
     0.764
HSM_1904
PFAM: type III effector Hrp-dependent outers; KEGG: hso:HS_0013 possible secretion system component.
  
    0.758
HSM_1905
PFAM: class II aldolase/adducin family protein; KEGG: hso:HS_0014 possible L-fuculose-phosphate aldolase, aldolase class II family.
       0.743
HSM_0138
KEGG: hso:HS_0265 hypothetical protein.
  
     0.728
HSM_0331
PFAM: Opacity-associated protein A; KEGG: hso:HS_1287 opacity associated protein A.
  
     0.702
lolB
Outer membrane lipoprotein LolB; Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein.
  
   
 0.682
HSM_1372
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: hso:HS_0894 hypothetical protein.
  
     0.680
Your Current Organism:
Histophilus somni
NCBI taxonomy Id: 228400
Other names: H. somni 2336, Haemophilus somnus 2336, Histophilus somni 2336, Histophilus somni str. 2336
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