STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HNE_0007Tim44 domain protein; Identified by match to protein family HMM PF04280. (204 aa)    
Predicted Functional Partners:
secB
Protein-export protein SecB; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA.
 
     0.783
HNE_0009
Smr domain protein; Identified by match to protein family HMM PF01713.
 
     0.777
HNE_0010
Conserved hypothetical protein; Identified by similarity to PIR:D97688; match to protein family HMM PF06242.
  
     0.771
HNE_2955
Conserved hypothetical protein; Identified by similarity to GB:AAK24073.1; match to protein family HMM PF07031.
  
     0.734
HNE_0008
Putative transglycosylase MltA; Identified by similarity to GB:AAF42553.1; match to protein family HMM PF03562; match to protein family HMM PF06725.
       0.730
HNE_3354
Conserved hypothetical protein; Identified by similarity to GB:BAB50739.1.
  
     0.692
yidC
Inner membrane protein, 60 kDa; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.
  
     0.673
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
     0.658
HNE_2254
Putative NADH:ubiquinone oxidoreductase; Identified by match to protein family HMM PF05071.
  
     0.649
HNE_3434
Conserved hypothetical protein; Identified by similarity to GB:BAB51997.1; match to protein family HMM PF06347.
  
     0.648
Your Current Organism:
Hyphomonas neptunium
NCBI taxonomy Id: 228405
Other names: H. neptunium ATCC 15444, Hyphomonas neptunium ATCC 15444, Hyphomonas neptunium str. ATCC 15444, Hyphomonas neptunium strain ATCC 15444
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.