STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HNE_0010Conserved hypothetical protein; Identified by similarity to PIR:D97688; match to protein family HMM PF06242. (223 aa)    
Predicted Functional Partners:
lysS
lysyl-tRNA synthetase; Identified by match to protein family HMM PF01921; match to protein family HMM TIGR00467; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.791
HNE_2955
Conserved hypothetical protein; Identified by similarity to GB:AAK24073.1; match to protein family HMM PF07031.
  
   
 0.775
HNE_0007
Tim44 domain protein; Identified by match to protein family HMM PF04280.
  
     0.771
HNE_3354
Conserved hypothetical protein; Identified by similarity to GB:BAB50739.1.
  
   
 0.759
HNE_0388
Identified by match to protein family HMM PF01381.
  
     0.746
HNE_0108
Identified by match to protein family HMM PF01381.
  
     0.743
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
     0.738
HNE_1859
Identified by match to protein family HMM PF01381.
  
     0.729
HNE_0227
Identified by match to protein family HMM PF01381.
  
     0.694
bamD
Putative competence lipoprotein ComL; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
     0.687
Your Current Organism:
Hyphomonas neptunium
NCBI taxonomy Id: 228405
Other names: H. neptunium ATCC 15444, Hyphomonas neptunium ATCC 15444, Hyphomonas neptunium str. ATCC 15444, Hyphomonas neptunium strain ATCC 15444
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.