STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HNE_0394Conserved hypothetical protein; Identified by similarity to GB:AAK22211.1; match to protein family HMM PF07715. (680 aa)    
Predicted Functional Partners:
HNE_2082
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.711
HNE_1202
RDD family protein; Identified by match to protein family HMM PF06271.
  
     0.678
HNE_3538
TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
    0.671
HNE_2662
Transporter, outer membrane receptor (OMR) family; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
    0.607
HNE_1695
Outer membrane efflux protein; Identified by match to protein family HMM PF02321.
  
   
 0.581
HNE_3111
Putative lipoprotein; Identified by similarity to GB:AAK22112.1.
  
     0.568
HNE_0634
Conserved hypothetical protein; Identified by similarity to GB:AAK25513.1.
  
     0.562
HNE_3150
Rhodanese-like domain protein; Identified by match to protein family HMM PF00581.
  
     0.559
HNE_2961
Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106; match to protein family HMM TIGR01409; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.547
HNE_1204
Conserved hypothetical protein; Identified by similarity to GB:AAK22553.1; match to protein family HMM PF01882.
  
     0.528
Your Current Organism:
Hyphomonas neptunium
NCBI taxonomy Id: 228405
Other names: H. neptunium ATCC 15444, Hyphomonas neptunium ATCC 15444, Hyphomonas neptunium str. ATCC 15444, Hyphomonas neptunium strain ATCC 15444
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.