STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HNE_0605Identified by match to protein family HMM PF01757. (377 aa)    
Predicted Functional Partners:
HNE_0606
Conserved hypothetical protein; Identified by similarity to GB:AAK22190.1.
    0.955
HNE_0607
Putative membrane protein.
     
 0.503
HNE_1447
Nuclease domain protein; Identified by match to protein family HMM PF00565.
   
  
 0.492
chvG
Sensor histidine kinase ChvG; Identified by similarity to SP:Q07737; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.
   
  
 0.491
Your Current Organism:
Hyphomonas neptunium
NCBI taxonomy Id: 228405
Other names: H. neptunium ATCC 15444, Hyphomonas neptunium ATCC 15444, Hyphomonas neptunium str. ATCC 15444, Hyphomonas neptunium strain ATCC 15444
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