STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HNE_0628Putative lipoprotein. (294 aa)    
Predicted Functional Partners:
prfA
Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.
  
    0.782
HNE_0627
MOSC domain protein; Identified by match to protein family HMM PF03473; match to protein family HMM PF03476.
       0.773
prmC
Methyltransferase, HemK family; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.
       0.773
HNE_1037
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
    
 
 0.587
HNE_0625
Conserved hypothetical protein; Identified by similarity to PIR:AI2479.
       0.578
HNE_0624
Acetyl xylan esterase domain protein.
       0.490
HNE_3424
Hydrolase, alpha/beta fold family; Identified by match to protein family HMM PF00561.
 
     0.467
HNE_3127
Putative aminoglycoside N6'-acetyltransferase; Identified by similarity to SP:P19650; match to protein family HMM PF00583.
 
   
 0.447
HNE_1353
Identified by match to protein family HMM PF01757.
  
     0.438
HNE_0630
Conserved domain protein; Identified by similarity to GB:BAB50321.1.
       0.434
Your Current Organism:
Hyphomonas neptunium
NCBI taxonomy Id: 228405
Other names: H. neptunium ATCC 15444, Hyphomonas neptunium ATCC 15444, Hyphomonas neptunium str. ATCC 15444, Hyphomonas neptunium strain ATCC 15444
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.