STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HNE_0809Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028. (446 aa)    
Predicted Functional Partners:
HNE_0984
Conserved hypothetical protein; Identified by similarity to GB:AAS03215.1.
  0.940
HNE_0672
Enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737.
  
 0.924
HNE_1277
Carboxyl transferase domain protein; Identified by match to protein family HMM PF01039.
 
 
 0.919
mccA
methylcrotonoyl-CoA carboxylase alpha chain; Identified by similarity to SP:Q42523; match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF02785; match to protein family HMM PF02786.
  
 0.916
HNE_0930
Identified by match to protein family HMM PF01636.
 
   0.871
HNE_0907
Identified by match to protein family HMM PF00378.
  
  0.801
HNE_0981
Identified by match to protein family HMM PF00378.
  
  0.801
HNE_2777
Identified by match to protein family HMM PF00378.
  
  0.801
HNE_0957
Identified by match to protein family HMM PF00378.
  
  0.800
HNE_3284
enoyl-CoA hydratase/isomerase domain protein; Identified by match to protein family HMM PF00378.
  
  0.800
Your Current Organism:
Hyphomonas neptunium
NCBI taxonomy Id: 228405
Other names: H. neptunium ATCC 15444, Hyphomonas neptunium ATCC 15444, Hyphomonas neptunium str. ATCC 15444, Hyphomonas neptunium strain ATCC 15444
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