STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HNE_1046Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583. (189 aa)    
Predicted Functional Partners:
HNE_1044
Conserved domain protein; Identified by similarity to PIR:C83632.
       0.821
thrC
Threonine synthase; Identified by match to protein family HMM PF00291; match to protein family HMM TIGR00260.
       0.820
HNE_1043
Cytochrome c oxidase, subunit III; Identified by similarity to SP:P06030; match to protein family HMM PF00510.
       0.616
HNE_1345
Conserved hypothetical protein; Identified by similarity to GB:AAK24320.1.
  
     0.544
HNE_1047
EAL domain protein; Identified by match to protein family HMM PF00563.
      0.543
cyoE
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group; Belongs to the UbiA prenyltransferase family. Protoheme IX farnesyltransferase subfamily.
       0.534
ctaG
Cytochrome c oxidase assembly protein; Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I; Belongs to the COX11/CtaG family.
       0.534
HNE_2561
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
  
   
 0.525
HNE_2673
Putative deoxycytidine triphosphate deaminase.
 
    0.495
HNE_1048
Conserved hypothetical protein; Identified by similarity to SP:P45941.
       0.475
Your Current Organism:
Hyphomonas neptunium
NCBI taxonomy Id: 228405
Other names: H. neptunium ATCC 15444, Hyphomonas neptunium ATCC 15444, Hyphomonas neptunium str. ATCC 15444, Hyphomonas neptunium strain ATCC 15444
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.