HNE_1099 protein (Hyphomonas neptunium) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

HNE_1099

acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028. (396 aa)

Predicted Functional Partners:

HNE_0672

0.891

etfA

0.886

HNE_0930

0.878

HNE_1098

0.841

HNE_1100

0.717

HNE_0065

0.715

HNE_0566

0.715

HNE_1824

0.715

HNE_1827

0.715

HNE_2804

0.715

Your Current Organism:

Hyphomonas neptunium

NCBI taxonomy Id: 228405
Other names: H. neptunium ATCC 15444, Hyphomonas neptunium ATCC 15444, Hyphomonas neptunium str. ATCC 15444, Hyphomonas neptunium strain ATCC 15444

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HNE_0065	HNE_0672	HNE_0065	HNE_0672	Identified by match to protein family HMM PF00378.	Enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737.	0.625
HNE_0065	HNE_1099	HNE_0065	HNE_1099	Identified by match to protein family HMM PF00378.	acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.	0.715
HNE_0065	HNE_1824	HNE_0065	HNE_1824	Identified by match to protein family HMM PF00378.	enoyl-CoA hydratase; Identified by match to protein family HMM PF00378.	0.737
HNE_0065	HNE_2804	HNE_0065	HNE_2804	Identified by match to protein family HMM PF00378.	Identified by match to protein family HMM PF00378.	0.507
HNE_0566	HNE_0672	HNE_0566	HNE_0672	enoyl-CoA hydratase; Identified by similarity to SP:P14604; match to protein family HMM PF00378.	Enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737.	0.642
HNE_0566	HNE_1099	HNE_0566	HNE_1099	enoyl-CoA hydratase; Identified by similarity to SP:P14604; match to protein family HMM PF00378.	acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.	0.715
HNE_0566	HNE_1824	HNE_0566	HNE_1824	enoyl-CoA hydratase; Identified by similarity to SP:P14604; match to protein family HMM PF00378.	enoyl-CoA hydratase; Identified by match to protein family HMM PF00378.	0.709
HNE_0566	HNE_2804	HNE_0566	HNE_2804	enoyl-CoA hydratase; Identified by similarity to SP:P14604; match to protein family HMM PF00378.	Identified by match to protein family HMM PF00378.	0.462
HNE_0672	HNE_0065	HNE_0672	HNE_0065	Enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737.	Identified by match to protein family HMM PF00378.	0.625
HNE_0672	HNE_0566	HNE_0672	HNE_0566	Enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737.	enoyl-CoA hydratase; Identified by similarity to SP:P14604; match to protein family HMM PF00378.	0.642
HNE_0672	HNE_1098	HNE_0672	HNE_1098	Enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737.	MaoC domain protein; Identified by match to protein family HMM PF01575.	0.552
HNE_0672	HNE_1099	HNE_0672	HNE_1099	Enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737.	acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.	0.891
HNE_0672	HNE_1824	HNE_0672	HNE_1824	Enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737.	enoyl-CoA hydratase; Identified by match to protein family HMM PF00378.	0.705
HNE_0672	HNE_1827	HNE_0672	HNE_1827	Enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737.	enoyl-CoA hydratase; Identified by similarity to SP:P14604; match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family.	0.645
HNE_0672	HNE_2804	HNE_0672	HNE_2804	Enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737.	Identified by match to protein family HMM PF00378.	0.687
HNE_0672	etfA	HNE_0672	HNE_3470	Enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737.	Electron transfer flavoprotein, alpha subunit; Identified by similarity to SP:P38974; match to protein family HMM PF00766; match to protein family HMM PF01012.	0.782
HNE_0930	HNE_1099	HNE_0930	HNE_1099	Identified by match to protein family HMM PF01636.	acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.	0.878
HNE_1098	HNE_0672	HNE_1098	HNE_0672	MaoC domain protein; Identified by match to protein family HMM PF01575.	Enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737.	0.552
HNE_1098	HNE_1099	HNE_1098	HNE_1099	MaoC domain protein; Identified by match to protein family HMM PF01575.	acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.	0.841
HNE_1098	HNE_1100	HNE_1098	HNE_1100	MaoC domain protein; Identified by match to protein family HMM PF01575.	Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family.	0.727

page 1 of 3

Server load: low (18%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2024

Credits

Access

Info

About