node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
HNE_1219 | rplC | HNE_1219 | HNE_2851 | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.736 |
HNE_1219 | rplD | HNE_1219 | HNE_2850 | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | Ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 0.746 |
HNE_1219 | rplM | HNE_1219 | HNE_2316 | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.735 |
HNE_1219 | rplU | HNE_1219 | HNE_2559 | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.742 |
HNE_1219 | rplW | HNE_1219 | HNE_2849 | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | Ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.777 |
HNE_1219 | rpmE | HNE_1219 | HNE_3193 | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | Ribosomal protein L31; Identified by match to protein family HMM TIGR00105; Belongs to the bacterial ribosomal protein bL31 family. | 0.745 |
HNE_1219 | rpmG | HNE_1219 | HNE_2282 | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | Ribosomal protein L33; Identified by match to protein family HMM PF00471; match to protein family HMM TIGR01023; Belongs to the bacterial ribosomal protein bL33 family. | 0.749 |
HNE_1219 | rpsC | HNE_1219 | HNE_2845 | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.732 |
HNE_1219 | rpsO | HNE_1219 | HNE_3442 | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.737 |
HNE_1219 | rpsP | HNE_1219 | HNE_0038 | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | Ribosomal protein S16; Identified by similarity to SP:P21474; match to protein family HMM PF00886; match to protein family HMM TIGR00002; Belongs to the bacterial ribosomal protein bS16 family. | 0.757 |
rplC | HNE_1219 | HNE_2851 | HNE_1219 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | 0.736 |
rplC | rplD | HNE_2851 | HNE_2850 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 0.999 |
rplC | rplM | HNE_2851 | HNE_2316 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.999 |
rplC | rplU | HNE_2851 | HNE_2559 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.998 |
rplC | rplW | HNE_2851 | HNE_2849 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.999 |
rplC | rpmE | HNE_2851 | HNE_3193 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Ribosomal protein L31; Identified by match to protein family HMM TIGR00105; Belongs to the bacterial ribosomal protein bL31 family. | 0.987 |
rplC | rpmG | HNE_2851 | HNE_2282 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Ribosomal protein L33; Identified by match to protein family HMM PF00471; match to protein family HMM TIGR01023; Belongs to the bacterial ribosomal protein bL33 family. | 0.994 |
rplC | rpsC | HNE_2851 | HNE_2845 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.999 |
rplC | rpsO | HNE_2851 | HNE_3442 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.997 |
rplC | rpsP | HNE_2851 | HNE_0038 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Ribosomal protein S16; Identified by similarity to SP:P21474; match to protein family HMM PF00886; match to protein family HMM TIGR00002; Belongs to the bacterial ribosomal protein bS16 family. | 0.995 |