STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HNE_1237Identified by match to protein family HMM PF01381; match to protein family HMM PF06114. (479 aa)    
Predicted Functional Partners:
aceA
Isocitrate lyase; Identified by match to protein family HMM PF00463.
 
   
 0.860
aceB
Malate synthase A; Identified by match to protein family HMM PF01274; match to protein family HMM TIGR01344.
     
 0.789
HNE_1103
Identified by match to protein family HMM PF03972.
  
  
 0.447
HNE_1104
Identified by match to protein family HMM PF03972.
  
  
 0.447
HNE_0582
Transcriptional regulator, LuxR family; Identified by match to protein family HMM PF00196.
   
 
 0.445
nrdR
Transcriptional regulator, NrdR family; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family.
   
  
 0.437
HNE_3394
HNH endonuclease domain protein; Identified by match to protein family HMM PF01844.
 
   
 0.429
HNE_0818
Identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478.
     
 0.417
HNE_2718
Conserved hypothetical protein.
     
 0.414
HNE_3472
Putative folylpolyglutamate synthase; Identified by match to protein family HMM TIGR01499; Belongs to the folylpolyglutamate synthase family.
     
 0.411
Your Current Organism:
Hyphomonas neptunium
NCBI taxonomy Id: 228405
Other names: H. neptunium ATCC 15444, Hyphomonas neptunium ATCC 15444, Hyphomonas neptunium str. ATCC 15444, Hyphomonas neptunium strain ATCC 15444
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