STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HNE_1253Major facilitator family transporter; Identified by match to protein family HMM PF07690. (447 aa)    
Predicted Functional Partners:
HNE_1251
Peptidase, family M20/M25/M40; Identified by match to protein family HMM PF01546.
 
     0.889
HNE_1256
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.868
HNE_1252
Monooxygenase, luciferase family; Identified by match to protein family HMM PF00296.
 
    0.859
HNE_1258
Putative TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
 
     0.569
HNE_1257
Identified by match to protein family HMM PF00857.
 
     0.568
HNE_3409
Peptidase, M23 family; Identified by match to protein family HMM PF01551.
  
     0.510
HNE_2456
Transporter, outer membrane receptor (OMR) family; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
     0.509
HNE_2596
Putative lipoprotein.
  
     0.501
HNE_1471
Conserved hypothetical protein; Identified by similarity to OMNI:PIN0532.
  
     0.490
HNE_1472
Conserved hypothetical protein; Identified by similarity to GB:CAE31223.1.
  
     0.488
Your Current Organism:
Hyphomonas neptunium
NCBI taxonomy Id: 228405
Other names: H. neptunium ATCC 15444, Hyphomonas neptunium ATCC 15444, Hyphomonas neptunium str. ATCC 15444, Hyphomonas neptunium strain ATCC 15444
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.