STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HNE_1263Putative sensor histidine kinase; Identified by match to protein family HMM PF02518. (676 aa)    
Predicted Functional Partners:
HNE_1264
Putative DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.
 
 
 0.929
pspC
Phage shock protein C; Identified by similarity to SP:P23855; match to protein family HMM PF04024; match to protein family HMM TIGR02978.
  
  
 0.749
HNE_0582
Transcriptional regulator, LuxR family; Identified by match to protein family HMM PF00196.
 
 
 0.716
pspA
Phage shock protein A; Identified by similarity to SP:P23853; match to protein family HMM PF04012; match to protein family HMM TIGR02977.
  
  
 0.649
HNE_1508
Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF01627; match to protein family HMM PF02518.
  
 
 0.644
HNE_2471
Transcriptional regulator, LuxR family; Identified by match to protein family HMM PF00196.
  
 
 0.635
HNE_0919
Beta-lactamase family protein; Hydrolyzes 6-aminopenicillinic acid and 7- aminocephalosporanic acid (ACA) derivatives.
 
     0.632
HNE_1275
Sensory box sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229.
  
 
 0.623
HNE_3143
Sensory box sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229.
  
 
 0.623
HNE_2512
YD repeat/RHS repeat protein; Identified by match to protein family HMM PF05593; match to protein family HMM TIGR01643.
  
   
 0.604
Your Current Organism:
Hyphomonas neptunium
NCBI taxonomy Id: 228405
Other names: H. neptunium ATCC 15444, Hyphomonas neptunium ATCC 15444, Hyphomonas neptunium str. ATCC 15444, Hyphomonas neptunium strain ATCC 15444
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.