STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HNE_1278Putative general stress protein; Identified by similarity to SP:P80238. (164 aa)    
Predicted Functional Partners:
HNE_2349
Identified by match to protein family HMM PF05532; Belongs to the UPF0337 (CsbD) family.
  
    0.819
HNE_1075
Intracellular protease, PfpI family; Identified by match to protein family HMM PF01965; match to protein family HMM TIGR01382.
 
  
 0.673
HNE_0479
Putative membrane protein; Identified by match to protein family HMM PF03631.
 
    0.573
HNE_3086
Putative sensory box sensor histidine kinase; Identified by match to protein family HMM PF00989; match to protein family HMM PF07536; match to protein family HMM TIGR00229.
 
     0.506
HNE_1279
Hypothetical protein; Identified by Glimmer2; putative.
       0.495
HNE_0423
Putative sensor histidine kinase; Identified by match to protein family HMM PF02518; match to protein family HMM PF07536.
  
     0.493
HNE_2265
Conserved hypothetical protein; Identified by similarity to GB:AAN30499.1.
   
    0.493
HNE_3299
Conserved hypothetical protein; Identified by similarity to GB:CAC47295.1.
   
    0.493
HNE_3301
Conserved domain protein; Identified by similarity to GB:AAM40706.1.
   
    0.493
HNE_2350
Putative sensory box sensor histidine kinase; Identified by match to protein family HMM PF00989; match to protein family HMM PF07536; match to protein family HMM TIGR00229.
 
     0.464
Your Current Organism:
Hyphomonas neptunium
NCBI taxonomy Id: 228405
Other names: H. neptunium ATCC 15444, Hyphomonas neptunium ATCC 15444, Hyphomonas neptunium str. ATCC 15444, Hyphomonas neptunium strain ATCC 15444
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