STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HNE_1323Potassium uptake protein, TrkH family; Identified by similarity to GB:BAA32063.1; match to protein family HMM PF02386. (457 aa)    
Predicted Functional Partners:
HNE_2347
TrkA domain protein; Identified by match to protein family HMM PF02080.
  
 
 0.790
HNE_0436
Transporter, cation channel family; Identified by match to protein family HMM PF00520; match to protein family HMM PF07885.
  
 
 0.630
trkA
Potassium uptake protein TrkA; Identified by similarity to SP:P39445; match to protein family HMM PF02080; match to protein family HMM PF02254.
  
 
 0.630
HNE_1322
6-aminohexanoate-cyclic-dimer hydrolase; Identified by similarity to SP:P13397; match to protein family HMM PF01425; Belongs to the amidase family.
  
  
 0.494
kefC
Glutathione-regulated potassium-efflux system protein KefC; Identified by similarity to SP:P03819; match to protein family HMM PF00999; match to protein family HMM PF02254; match to protein family HMM TIGR00932; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
   
 
 0.474
HNE_2775
Glutathione-regulated potassium-efflux system protein; Identified by similarity to GB:AAS14895.1; match to protein family HMM PF00999; match to protein family HMM PF02254; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
   
 
 0.474
HNE_1321
Conserved hypothetical protein; Identified by similarity to GB:BAC91546.1; match to protein family HMM PF04828.
       0.462
Your Current Organism:
Hyphomonas neptunium
NCBI taxonomy Id: 228405
Other names: H. neptunium ATCC 15444, Hyphomonas neptunium ATCC 15444, Hyphomonas neptunium str. ATCC 15444, Hyphomonas neptunium strain ATCC 15444
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