STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HNE_1329Oxidoreductase, 2-nitropropane dioxygenase family; Identified by match to protein family HMM PF03060. (332 aa)    
Predicted Functional Partners:
HNE_0476
Oxidoreductase, 2-nitropropane dioxygenase family; Identified by match to protein family HMM PF00478; match to protein family HMM PF03060.
  
  
 
0.920
narK
Nitrite extrusion protein; Identified by similarity to SP:P10903; match to protein family HMM PF07690; match to protein family HMM TIGR00886.
  
 
 0.911
narI
Respiratory nitrate reductase, gamma subunit; Identified by match to protein family HMM PF02665; match to protein family HMM TIGR00351.
    
  0.901
narG
Nitrate reductase, alpha subunit; Identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR01580; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
    
  0.900
narH
Nitrate reductase, beta subunit; Identified by match to protein family HMM PF00037; match to protein family HMM TIGR01660.
    
  0.900
nirB
Nitrite reductase [NAD(P)H], large subunit; Identified by match to protein family HMM PF00070; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM PF04324; match to protein family HMM PF07992; match to protein family HMM TIGR02374; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
     
 0.900
nirD
Nitrite reductase [NAD(P)H], small subunit; Identified by match to protein family HMM PF00355; match to protein family HMM TIGR02378.
     
  0.900
HNE_2094
Identified by match to protein family HMM PF00441; match to protein family HMM PF02770.
 
  
 0.576
HNE_2646
Identified by match to protein family HMM PF00441; match to protein family HMM PF02770.
 
  
 0.540
HNE_3225
Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028.
 
  
 0.519
Your Current Organism:
Hyphomonas neptunium
NCBI taxonomy Id: 228405
Other names: H. neptunium ATCC 15444, Hyphomonas neptunium ATCC 15444, Hyphomonas neptunium str. ATCC 15444, Hyphomonas neptunium strain ATCC 15444
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.