STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HNE_1422Deoxyribodipyrimidine photolyase homolog; Identified by match to protein family HMM PF04244. (512 aa)    
Predicted Functional Partners:
HNE_1421
Hypothetical protein; Identified by Glimmer2; putative.
       0.743
HNE_3082
Identified by match to protein family HMM PF00875; match to protein family HMM PF03441; Belongs to the DNA photolyase family.
 
   
 0.728
HNE_3232
Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370.
 
   
 0.714
HNE_1419
Putative sulfurtransferase; Identified by match to protein family HMM PF00581.
       0.572
metC
Cystathionine beta-lyase; Identified by match to protein family HMM PF01053; match to protein family HMM TIGR01324.
       0.539
HNE_1420
Cysteine synthase/cystathionine beta-synthase family protein; Identified by similarity to SP:P50867; match to protein family HMM PF00291.
       0.539
HNE_2941
Putative lipoprotein; Identified by similarity to GB:BAC94104.1.
 
   
 0.513
HNE_1796
Conserved hypothetical protein; Identified by match to protein family HMM PF07103.
 
   
 0.504
HNE_1423
Putative sensory box-containing diguanylate cyclase; Identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254.
       0.487
HNE_1797
Conserved hypothetical protein; Identified by similarity to GB:BAB53726.1; match to protein family HMM PF01266.
 
   
 0.473
Your Current Organism:
Hyphomonas neptunium
NCBI taxonomy Id: 228405
Other names: H. neptunium ATCC 15444, Hyphomonas neptunium ATCC 15444, Hyphomonas neptunium str. ATCC 15444, Hyphomonas neptunium strain ATCC 15444
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.