STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HNE_1565Putative peptidylprolyl cis-trans isomerase; Identified by match to protein family HMM PF00639. (372 aa)    
Predicted Functional Partners:
narI
Respiratory nitrate reductase, gamma subunit; Identified by match to protein family HMM PF02665; match to protein family HMM TIGR00351.
 
  
 0.939
narJ
Nitrate reductase molybdenum cofactor assembly chaperone; Identified by match to protein family HMM PF02613; match to protein family HMM TIGR00684.
 
    0.934
narK
Nitrite extrusion protein; Identified by similarity to SP:P10903; match to protein family HMM PF07690; match to protein family HMM TIGR00886.
 
  
 0.893
narH
Nitrate reductase, beta subunit; Identified by match to protein family HMM PF00037; match to protein family HMM TIGR01660.
 
    0.882
narG
Nitrate reductase, alpha subunit; Identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR01580; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
    0.854
HNE_1558
Cyclic nucleotide binding protein; Identified by match to protein family HMM PF00027.
 
  
 0.785
HNE_1566
Conserved hypothetical protein; Identified by similarity to GB:AAQ58241.1.
       0.739
HNE_1563
Conserved hypothetical protein; Identified by similarity to GB:AAK22594.1.
     
 0.705
HNE_1567
Carbonic anhydrase; Identified by match to protein family HMM PF00484.
       0.689
HNE_3175
PPIC-type PPIASE domain protein; Identified by match to protein family HMM PF00639.
  
     0.570
Your Current Organism:
Hyphomonas neptunium
NCBI taxonomy Id: 228405
Other names: H. neptunium ATCC 15444, Hyphomonas neptunium ATCC 15444, Hyphomonas neptunium str. ATCC 15444, Hyphomonas neptunium strain ATCC 15444
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