STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HNE_2002Senescence marker protein-30 family protein; Identified by match to protein family HMM PF03758. (296 aa)    
Predicted Functional Partners:
HNE_2003
Putative 2-dehydro-3-deoxygalactonokinase; Identified by similarity to SP:P31459.
 
   
 0.863
HNE_2820
Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  
 0.814
tpiA
Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
 
    
 0.492
secE
Preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
       0.482
HNE_2004
Identified by match to protein family HMM PF03819; match to protein family HMM TIGR00444.
       0.454
HNE_2186
Oxidoreductase, NAD-binding; Identified by match to protein family HMM PF01408; match to protein family HMM PF02894.
 
  
 0.445
HNE_0032
N-acylglucosamine 2-epimerase; Identified by match to protein family HMM PF07221.
  
   
 0.440
HNE_2133
Mandelate racemase/muconate lactonizing enzyme family protein; Identified by match to protein family HMM PF01188.
 
   
 0.423
HNE_0570
Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.
  
     0.420
HNE_0479
Putative membrane protein; Identified by match to protein family HMM PF03631.
  
    0.406
Your Current Organism:
Hyphomonas neptunium
NCBI taxonomy Id: 228405
Other names: H. neptunium ATCC 15444, Hyphomonas neptunium ATCC 15444, Hyphomonas neptunium str. ATCC 15444, Hyphomonas neptunium strain ATCC 15444
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