Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
glnLNitrogen regulation protein NR(II); Identified by similarity to SP:P45670; match to protein family HMM PF00512; match to protein family HMM PF02518. (352 aa)    
Predicted Functional Partners:
glnG
Nitrogen regulation protein NR(I); Identified by similarity to SP:P06713; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199.
 0.997
glnB
Nitrogen regulatory protein P-II; Identified by similarity to SP:P05826; match to protein family HMM PF00543; Belongs to the P(II) protein family.
  
 0.977
HNE_2013
Putative tRNA-dihydrouridine synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.
  
  
 0.912
ntrX
Sigma-54 dependent DNA-binding response regulator; Identified by similarity to SP:Q06065; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199.
 
 0.888
pleC
Non-motile and phage-resistance protein; Identified by similarity to SP:P37894; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229.
 
 
 
 0.808
HNE_3408
Nitrogen regulatory protein P-II; Identified by match to protein family HMM PF00543; Belongs to the P(II) protein family.
  
 
 0.782
HNE_3542
Identified by match to protein family HMM PF00909.
  
 
 0.754
phoB
Phosphate regulon transcriptional regulatory protein PhoB; Identified by similarity to GB:CAA11074.1; match to protein family HMM PF00072; match to protein family HMM PF00486; match to protein family HMM TIGR02154.
  
 
 
 0.752
HNE_3039
Sigma-54 dependent DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199.
 
 0.750
HNE_2285
Cell division response regulator DivK; Identified by similarity to PDB:1M5T_A; match to protein family HMM PF00072.
 
 
 
 0.741
Your Current Organism:
Hyphomonas neptunium
NCBI taxonomy Id: 228405
Other names: H. neptunium ATCC 15444, Hyphomonas neptunium ATCC 15444, Hyphomonas neptunium str. ATCC 15444, Hyphomonas neptunium strain ATCC 15444
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