STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HNE_2090Peptidase, family M28; Identified by match to protein family HMM PF01546; match to protein family HMM PF04389. (578 aa)    
Predicted Functional Partners:
HNE_2999
Transporter, outer membrane receptor (OMR) family; Identified by similarity to SP:P38370.
  
     0.707
HNE_2873
TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
     0.676
HNE_1211
Identified by match to protein family HMM PF00135; Belongs to the type-B carboxylesterase/lipase family.
 
 0.667
HNE_1337
TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
     0.648
rlmJ
Conserved hypothetical protein; Specifically methylates the adenine in position 2030 of 23S rRNA.
       0.615
HNE_1217
Dipeptidyl aminopeptidase IV; Identified by similarity to GB:BAA11872.1; match to protein family HMM PF00326; match to protein family HMM PF00930.
  
    0.604
HNE_3050
TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
     0.591
HNE_2451
Transporter, outer membrane receptor (OMR) family; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01782.
  
     0.561
HNE_2592
Transporter, outer membrane receptor (OMR) family; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
     0.560
HNE_1376
Identified by similarity to SP:P36574; match to protein family HMM PF00854; match to protein family HMM TIGR00924.
 
   0.543
Your Current Organism:
Hyphomonas neptunium
NCBI taxonomy Id: 228405
Other names: H. neptunium ATCC 15444, Hyphomonas neptunium ATCC 15444, Hyphomonas neptunium str. ATCC 15444, Hyphomonas neptunium strain ATCC 15444
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.