STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HNE_2521Identified by match to protein family HMM PF05137. (310 aa)    
Predicted Functional Partners:
HNE_2517
Type II secretion system protein; Identified by match to protein family HMM PF00437.
  
 
 0.928
HNE_2518
Bacterial type II secretion system protein F; Identified by match to protein family HMM PF00482.
   
 
 0.879
HNE_2519
Hypothetical protein; Identified by Glimmer2; putative.
     
 0.825
HNE_2514
Type II secretion system protein; Identified by match to protein family HMM PF00263; match to protein family HMM PF03958; Belongs to the bacterial secretin family.
     
 0.791
gspG2
General secretion pathway protein G; Identified by match to protein family HMM PF07963; match to protein family HMM TIGR01710; match to protein family HMM TIGR02532.
  
  
 0.783
HNE_2520
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
HNE_2522
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
HNE_2523
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
HNE_2515
Hypothetical protein; Identified by Glimmer2; putative.
       0.752
gspE
General secretory pathway protein E; Identified by match to protein family HMM PF00437; match to protein family HMM TIGR02533.
  
 
 0.698
Your Current Organism:
Hyphomonas neptunium
NCBI taxonomy Id: 228405
Other names: H. neptunium ATCC 15444, Hyphomonas neptunium ATCC 15444, Hyphomonas neptunium str. ATCC 15444, Hyphomonas neptunium strain ATCC 15444
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.