STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HNE_2631Identified by match to protein family HMM TIGR01352. (201 aa)    
Predicted Functional Partners:
HNE_2633
Putative TonB system transport protein ExbD; Identified by similarity to SP:Q9ZHV9; match to protein family HMM PF02472.
 
 
 0.974
HNE_2632
Putative TonB system transport protein ExbD; Identified by similarity to SP:Q9ZHV9; match to protein family HMM PF02472.
 
 
 0.973
HNE_2634
Putative TonB system transport protein ExbB; Identified by similarity to GB:AAC69454.1; match to protein family HMM PF01618.
 
 
 0.970
HNE_2592
Transporter, outer membrane receptor (OMR) family; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
 
 
 0.962
HNE_2635
MotA/TolQ/ExbB proton channel family protein; Identified by match to protein family HMM PF01618.
 
 
 0.961
HNE_2630
Hypothetical protein; Identified by Glimmer2; putative.
 
 
   0.894
HNE_2636
Conserved hypothetical protein.
 
   
 0.891
HNE_3538
TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
 
 
 0.857
HNE_0165
tonB dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
 
 
 0.827
HNE_3050
TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
 
 
 0.825
Your Current Organism:
Hyphomonas neptunium
NCBI taxonomy Id: 228405
Other names: H. neptunium ATCC 15444, Hyphomonas neptunium ATCC 15444, Hyphomonas neptunium str. ATCC 15444, Hyphomonas neptunium strain ATCC 15444
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.