STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HNE_2648Putative glycosyl transferase ExoA; Identified by similarity to SP:P33691; match to protein family HMM PF00535. (341 aa)    
Predicted Functional Partners:
HNE_1195
Putative glycosyl transferase; Identified by similarity to SP:P33694.
    
 0.914
HNE_2092
Glycosyl transferase, group 2 family protein; Identified by similarity to SP:P33695; match to protein family HMM PF00535.
     0.782
HNE_1196
Putative O-antigen polymerase; Identified by match to protein family HMM PF04932.
 
   
 0.758
HNE_1194
Chain length determinant family protein; Identified by match to protein family HMM PF02706.
 
  
 0.744
HNE_1508
Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF01627; match to protein family HMM PF02518.
  
 
 0.674
HNE_3508
Creatininase; Identified by match to protein family HMM PF02633.
  
  
 0.623
HNE_0675
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.
  
 
 0.616
HNE_2537
Hypothetical protein; Identified by Glimmer2; putative.
  
 
 0.616
HNE_2630
Hypothetical protein; Identified by Glimmer2; putative.
  
 
 0.616
HNE_3005
TPR domain protein; Identified by match to protein family HMM PF00515.
  
 
 0.616
Your Current Organism:
Hyphomonas neptunium
NCBI taxonomy Id: 228405
Other names: H. neptunium ATCC 15444, Hyphomonas neptunium ATCC 15444, Hyphomonas neptunium str. ATCC 15444, Hyphomonas neptunium strain ATCC 15444
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