STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HNE_2677Conserved hypothetical protein; Identified by match to protein family HMM PF04338. (249 aa)    
Predicted Functional Partners:
HNE_2678
Peptidase, T1A (proteasome) family; Identified by similarity to GB:BAB48250.1; match to protein family HMM PF00227.
 
     0.666
HNE_2630
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.663
HNE_2631
Identified by match to protein family HMM TIGR01352.
  
     0.615
HNE_3538
TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
     0.613
HNE_0165
tonB dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
     0.576
HNE_2679
Identified by match to protein family HMM PF01841.
       0.544
HNE_2680
Conserved hypothetical protein; Identified by similarity to PIR:AB2864; match to protein family HMM PF04168.
       0.540
HNE_2681
Conserved hypothetical protein; Identified by similarity to PIR:D95989; match to protein family HMM PF04169; match to protein family HMM PF04174.
       0.540
HNE_2636
Conserved hypothetical protein.
  
     0.523
HNE_1695
Outer membrane efflux protein; Identified by match to protein family HMM PF02321.
  
   
 0.460
Your Current Organism:
Hyphomonas neptunium
NCBI taxonomy Id: 228405
Other names: H. neptunium ATCC 15444, Hyphomonas neptunium ATCC 15444, Hyphomonas neptunium str. ATCC 15444, Hyphomonas neptunium strain ATCC 15444
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.