STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HNE_2909Identified by match to protein family HMM PF00300. (199 aa)    
Predicted Functional Partners:
HNE_2908
Putative 3-deoxy-D-manno-octulosonate cytidylyltransferase; Identified by match to protein family HMM PF02348.
 
     0.863
HNE_2907
Putative lipoprotein.
       0.718
HNE_2905
Transcriptional regulator, BlaI/MecI/CopY family; Identified by similarity to SP:Q47839; match to protein family HMM PF03965.
  
    0.566
HNE_2906
Peptidase, M56 family; Identified by match to protein family HMM PF05569.
       0.534
Your Current Organism:
Hyphomonas neptunium
NCBI taxonomy Id: 228405
Other names: H. neptunium ATCC 15444, Hyphomonas neptunium ATCC 15444, Hyphomonas neptunium str. ATCC 15444, Hyphomonas neptunium strain ATCC 15444
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.