Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
HNE_3003Identified by match to protein family HMM PF01835; match to protein family HMM PF07703. (1665 aa)    
Predicted Functional Partners:
pbpC
Penicillin-binding protein 1C; Identified by similarity to SP:P76577; match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM PF06832; match to protein family HMM TIGR02073.
   
 0.958
HNE_3230
HemY domain protein; Identified by match to protein family HMM PF07219.
  
    0.674
HNE_3004
Conserved hypothetical protein; Identified by similarity to GB:AAK23039.1; match to protein family HMM PF01370.
       0.547
HNE_0983
Putative membrane protein; Identified by similarity to GB:AAK22621.1.
  
  
 0.504
HNE_1203
Putative membrane protein.
  
    0.445
HNE_3005
TPR domain protein; Identified by match to protein family HMM PF00515.
   
   0.440
HNE_1202
RDD family protein; Identified by match to protein family HMM PF06271.
  
    0.426
HNE_0600
Trypsin domain protein; Identified by match to protein family HMM PF00089.
    
 0.425
HNE_3146
Trypsin domain lipoprotein; Identified by match to protein family HMM PF00089.
    
 0.425
HNE_1204
Conserved hypothetical protein; Identified by similarity to GB:AAK22553.1; match to protein family HMM PF01882.
  
    0.410
Your Current Organism:
Hyphomonas neptunium
NCBI taxonomy Id: 228405
Other names: H. neptunium ATCC 15444, Hyphomonas neptunium ATCC 15444, Hyphomonas neptunium str. ATCC 15444, Hyphomonas neptunium strain ATCC 15444
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