STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HNE_3013Pilus assembly protein CpaD; Identified by similarity to GB:AAF40193.1; match to protein family HMM TIGR02522. (236 aa)    
Predicted Functional Partners:
HNE_3012
Pilus assembly protein CpaE; Identified by similarity to GB:AAF40194.1.
 
     0.941
HNE_3014
Pilus assembly protein CpaC; Identified by similarity to GB:AAF40192.1; match to protein family HMM PF00263; match to protein family HMM PF04972; Belongs to the bacterial secretin family.
 
   
 0.933
HNE_3015
Pilus assembly protein CpaB; Identified by similarity to GB:AAF40191.1; match to protein family HMM PF06981.
 
     0.918
HNE_3016
Pilus assembly protein CpaA; Identified by similarity to GB:AAF40190.1; match to protein family HMM PF01478.
 
     0.884
HNE_3009
Type II secretion system protein; Identified by match to protein family HMM PF00482.
 
     0.843
HNE_3018
Conserved hypothetical protein; Identified by similarity to GB:BAC46709.1.
 
   
 0.834
HNE_3020
Flp/Fap pilin component.
 
     0.816
HNE_3019
Identified by match to protein family HMM PF07811.
 
     0.813
HNE_3010
Secretion system protein; Identified by similarity to GB:AAF40196.1; match to protein family HMM PF00482.
 
     0.807
HNE_3008
TPR domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
 
     0.781
Your Current Organism:
Hyphomonas neptunium
NCBI taxonomy Id: 228405
Other names: H. neptunium ATCC 15444, Hyphomonas neptunium ATCC 15444, Hyphomonas neptunium str. ATCC 15444, Hyphomonas neptunium strain ATCC 15444
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