STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HNE_3092Transcriptional regulator, MarR family; Identified by match to protein family HMM PF01047. (154 aa)    
Predicted Functional Partners:
ompR
DNA-binding response regulator OmpR; Identified by similarity to SP:P31079; match to protein family HMM PF00072; match to protein family HMM PF00486.
     
 0.807
HNE_3094
Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.
  
  
 0.795
HNE_3161
rpsU-divergently transcribed protein; Identified by match to protein family HMM TIGR02396.
 
     0.688
HNE_3095
Hydrolase, carbon-nitrogen family; Identified by match to protein family HMM PF00795.
  
    0.649
ilvE
Branched-chain amino acid aminotransferase; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.
       0.629
HNE_3558
Putative lipoprotein; Identified by similarity to GB:AAK25712.1.
  
     0.512
HNE_3556
Putative lipoprotein.
  
     0.456
HNE_1128
Conserved hypothetical protein; Identified by similarity to GB:AAK24136.1.
  
    0.450
Your Current Organism:
Hyphomonas neptunium
NCBI taxonomy Id: 228405
Other names: H. neptunium ATCC 15444, Hyphomonas neptunium ATCC 15444, Hyphomonas neptunium str. ATCC 15444, Hyphomonas neptunium strain ATCC 15444
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.