STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HNE_3098Putative phosphatase; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR02247. (228 aa)    
Predicted Functional Partners:
HNE_0930
Identified by match to protein family HMM PF01636.
     0.927
HNE_2770
Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028.
 
 
  0.920
HNE_2794
Identified by match to protein family HMM PF01636.
      0.896
HNE_2413
Putative epoxide hydrolase; Identified by similarity to GB:CAA55294.1; match to protein family HMM PF00561.
  
 0.858
HNE_2751
Putative epoxide hydrolase; Identified by similarity to GB:CAA55294.1; match to protein family HMM PF00561.
  
 0.829
HNE_0516
acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.
 
  
  0.820
HNE_2795
Putative acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028.
 
  
  0.798
HNE_3096
Putative pterin-4a-carbinolamine dehydratase; Identified by match to protein family HMM PF01329.
       0.778
HNE_3097
Putative lipoprotein.
       0.777
HNE_2772
Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028.
 
  
  0.750
Your Current Organism:
Hyphomonas neptunium
NCBI taxonomy Id: 228405
Other names: H. neptunium ATCC 15444, Hyphomonas neptunium ATCC 15444, Hyphomonas neptunium str. ATCC 15444, Hyphomonas neptunium strain ATCC 15444
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