STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HNE_3170Identified by match to protein family HMM PF00156. (252 aa)    
Predicted Functional Partners:
dprA
DNA protecting protein DprA; Identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732.
 
 
 0.926
HNE_0239
Conserved hypothetical protein; Identified by similarity to GB:AAS95392.1.
   
    0.847
HNE_3400
Prephenate dehydrogenase; Identified by match to protein family HMM PF01408; match to protein family HMM PF02153; match to protein family HMM PF03446; match to protein family HMM PF03807.
   
  
 0.753
fliP
Flagellar biosynthetic protein FliP; Identified by similarity to SP:Q45980; match to protein family HMM PF00813.
   
    0.722
fliF
Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.
  
    0.711
HNE_0270
Flagellar basal-body rod protein; Identified by match to protein family HMM PF00460; match to protein family HMM PF06429; Belongs to the flagella basal body rod proteins family.
   
   0.694
grxC
Glutaredoxin 3; Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins.
       0.691
HNE_0796
Lipopolysaccharide ABC transporter, ATP-binding protein; Identified by similarity to GB:AAF04381.1; match to protein family HMM PF00005.
   
    0.687
HNE_3171
Conserved hypothetical protein; Identified by similarity to GB:AAK22816.1; match to protein family HMM PF05401.
  
    0.678
HNE_3168
Conserved hypothetical protein; Identified by match to protein family HMM PF06676.
       0.670
Your Current Organism:
Hyphomonas neptunium
NCBI taxonomy Id: 228405
Other names: H. neptunium ATCC 15444, Hyphomonas neptunium ATCC 15444, Hyphomonas neptunium str. ATCC 15444, Hyphomonas neptunium strain ATCC 15444
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.