STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HNE_3299Conserved hypothetical protein; Identified by similarity to GB:CAC47295.1. (95 aa)    
Predicted Functional Partners:
HNE_3301
Conserved domain protein; Identified by similarity to GB:AAM40706.1.
 
    
0.753
HNE_3300
Conserved domain protein; Identified by similarity to GB:AAT43525.1.
       0.689
HNE_3302
Conserved hypothetical protein; Identified by similarity to SP:Q88E79; match to protein family HMM PF05779; Belongs to the UPF0260 family.
       0.689
HNE_3303
Transcriptional regulator, ArsR family; Identified by match to protein family HMM PF01022.
       0.541
HNE_3304
Putative membrane protein.
       0.541
HNE_3305
Conserved hypothetical protein; Identified by similarity to PIR:C95983.
       0.541
HNE_3306
Conserved hypothetical protein; Identified by similarity to GB:BAC52018.1.
       0.541
HNE_3307
Conserved hypothetical protein; Identified by similarity to GB:BAB49428.1.
       0.541
mnmC
FAD dependent oxidoreductase domain protein; Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34; In the N-terminal section; belongs to the methyltransferase superfamily. tRNA (mnm(5)s(2)U34)-methyltransferase family.
  
    0.527
HNE_2349
Identified by match to protein family HMM PF05532; Belongs to the UPF0337 (CsbD) family.
  
    0.501
Your Current Organism:
Hyphomonas neptunium
NCBI taxonomy Id: 228405
Other names: H. neptunium ATCC 15444, Hyphomonas neptunium ATCC 15444, Hyphomonas neptunium str. ATCC 15444, Hyphomonas neptunium strain ATCC 15444
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.