STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HNE_3366Conserved hypothetical protein; Identified by similarity to GB:CAE25475.1; match to protein family HMM PF07896. (69 aa)    
Predicted Functional Partners:
HNE_2673
Putative deoxycytidine triphosphate deaminase.
  
     0.699
HNE_0855
HD domain protein; Identified by match to protein family HMM PF01966.
  
     0.680
HNE_1345
Conserved hypothetical protein; Identified by similarity to GB:AAK24320.1.
  
     0.649
HNE_3368
Putative ribosomal RNA small subunit methyltransferase B; Identified by similarity to SP:P36929; match to protein family HMM PF01029; match to protein family HMM PF01189; match to protein family HMM PF05175; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
       0.633
htpX
Peptidase, M48B family; Identified by match to protein family HMM PF01435; Belongs to the peptidase M48B family.
       0.619
hisS
histidyl-tRNA synthetase; Identified by match to protein family HMM PF00587; match to protein family HMM PF03129; match to protein family HMM TIGR00442.
  
     0.617
HNE_3160
Conserved hypothetical protein; Identified by similarity to GB:AAK25626.1.
  
     0.536
HNE_0748
Conserved hypothetical protein; Identified by similarity to GB:AAK23049.1; match to protein family HMM PF07372.
  
     0.500
HNE_0842
HAD hydrolase, IIA family; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01459; match to protein family HMM TIGR01460.
  
     0.456
HNE_0021
Identified by match to protein family HMM TIGR02466.
  
     0.451
Your Current Organism:
Hyphomonas neptunium
NCBI taxonomy Id: 228405
Other names: H. neptunium ATCC 15444, Hyphomonas neptunium ATCC 15444, Hyphomonas neptunium str. ATCC 15444, Hyphomonas neptunium strain ATCC 15444
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.