node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
glnS-2 | rplD | NE2363 | NE0402 | Probable aminotransferase; 5' remnant of gene destroyed by the creation of a 7.5 kb repeat, the intact gene is NE2368. | Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 0.917 |
glnS-2 | rplF | NE2363 | NE0416 | Probable aminotransferase; 5' remnant of gene destroyed by the creation of a 7.5 kb repeat, the intact gene is NE2368. | Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.942 |
glnS-2 | rplJ | NE2363 | NE2048 | Probable aminotransferase; 5' remnant of gene destroyed by the creation of a 7.5 kb repeat, the intact gene is NE2368. | Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.911 |
glnS-2 | rplM | NE2363 | NE1484 | Probable aminotransferase; 5' remnant of gene destroyed by the creation of a 7.5 kb repeat, the intact gene is NE2368. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.932 |
glnS-2 | rplO | NE2363 | NE0420 | Probable aminotransferase; 5' remnant of gene destroyed by the creation of a 7.5 kb repeat, the intact gene is NE2368. | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.924 |
glnS-2 | rplR | NE2363 | NE0417 | Probable aminotransferase; 5' remnant of gene destroyed by the creation of a 7.5 kb repeat, the intact gene is NE2368. | Ribosomal protein L18P/L5E:Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.941 |
glnS-2 | rplV | NE2363 | NE0406 | Probable aminotransferase; 5' remnant of gene destroyed by the creation of a 7.5 kb repeat, the intact gene is NE2368. | Ribosomal protein L22p / L17e; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). | 0.935 |
glnS-2 | rplW | NE2363 | NE0403 | Probable aminotransferase; 5' remnant of gene destroyed by the creation of a 7.5 kb repeat, the intact gene is NE2368. | Ribosomal L23 protein; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.951 |
glnS-2 | rplX | NE2363 | NE0412 | Probable aminotransferase; 5' remnant of gene destroyed by the creation of a 7.5 kb repeat, the intact gene is NE2368. | Ribosomal protein L24/bacterial NUSG:Ribosomal protein L24; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.924 |
glnS-2 | rpmC | NE2363 | NE0409 | Probable aminotransferase; 5' remnant of gene destroyed by the creation of a 7.5 kb repeat, the intact gene is NE2368. | Ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family. | 0.914 |
rplD | glnS-2 | NE0402 | NE2363 | Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | Probable aminotransferase; 5' remnant of gene destroyed by the creation of a 7.5 kb repeat, the intact gene is NE2368. | 0.917 |
rplD | rplF | NE0402 | NE0416 | Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.998 |
rplD | rplJ | NE0402 | NE2048 | Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.999 |
rplD | rplM | NE0402 | NE1484 | Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.998 |
rplD | rplO | NE0402 | NE0420 | Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.998 |
rplD | rplR | NE0402 | NE0417 | Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | Ribosomal protein L18P/L5E:Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.999 |
rplD | rplV | NE0402 | NE0406 | Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | Ribosomal protein L22p / L17e; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). | 0.999 |
rplD | rplW | NE0402 | NE0403 | Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | Ribosomal L23 protein; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.999 |
rplD | rplX | NE0402 | NE0412 | Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | Ribosomal protein L24/bacterial NUSG:Ribosomal protein L24; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.999 |
rplD | rpmC | NE0402 | NE0409 | Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | Ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family. | 0.999 |