STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NEQ243NEQ243. (220 aa)    
Predicted Functional Partners:
rps7
NEQ242; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center; Belongs to the universal ribosomal protein uS7 family.
       0.773
gatE
NEQ245; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln). The GatDE system is specific for glutamate and does not act on aspartate.
       0.773
rpl6
NEQ241; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
       0.671
NEQ232
NEQ232.
  
  
 0.650
polB
NEQ240; Possesses two activities: a DNA synthesis (polymerase) and an exonucleolytic activity that degrades single-stranded DNA in the 3' to 5' direction. Has a template-primer preference which is characteristic of a replicative DNA polymerase; Belongs to the DNA polymerase delta/II small subunit family.
       0.609
NEQ339
NEQ339; Conserved hypothetical protein [Methanococcus jannaschii]; COG1994: Zn-dependent proteases; IPR000130: Neutral zinc metallopeptidases, zinc-binding region.
  
  
 0.601
NEQ234
NEQ234; Magnesium chelatase subunit ChII [Pyrococcus furiosus]; COG0714: MoxR-like ATPases; IPR003593: AAA ATPase superfamily.
  
    0.504
NEQ238
NEQ238; Conserved hypothetical protein [Methanococcus jannaschii]; COG2890: Predicted rRNA or tRNA methylase; IPR000051: SAM (and some other nucleotide) binding motif; IPR002052: N-6 Adenine-specific DNA methylase; IPR002296: N6 adenine-specific DNA methyltransferase, N12 class.
       0.492
leuS
NEQ239; Isoleucine tRNA synthetase [Methanococcus jannaschii]; COG0495: Leucyl-tRNA synthetase; COG0143: Methionyl-tRNA synthetase; IPR002300: t-RNA synthetase, class Ia; IPR002308: Cysteinyl-tRNA synthetase; IPR001412: Aminoacyl-transfer RNA synthetases class-I; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.488
NEQ236
NEQ236; Hypothetical protein; PS50325: THR_RICH; IPR001687: ATP/GTP-binding site motif A (P-loop); PS50313: GLU_RICH.
       0.451
Your Current Organism:
Nanoarchaeum equitans
NCBI taxonomy Id: 228908
Other names: Microarchaeum sp. Kin4-M, N. equitans Kin4-M, Nanoarchaeum equitans Kin4-M, Nanoarchaeum equitans str. Kin4-M
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.