STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM01156.1Transmembrane family 220, helix. (115 aa)    
Predicted Functional Partners:
SEM01366.1
Hypothetical protein.
 
     0.834
SEM01245.1
3-dehydroquinate synthase.
 
     0.809
SEM01288.1
4-hydroxybenzoate polyprenyltransferase.
 
     0.807
SEM01213.1
Hypothetical protein.
 
     0.802
SEM01181.1
Predicted pyrophosphatase or phosphodiesterase, AlkP superfamily.
       0.773
SEM01327.1
Hypothetical protein.
 
     0.768
SEM03126.1
Putative membrane-bound dehydrogenase domain-containing protein.
  
     0.653
SEM01409.1
tRNA-(ms[2]io[6]A)-hydroxylase.
       0.513
SEL61970.1
Hypothetical protein.
  
     0.493
SEL25103.1
Cytochrome c.
  
     0.461
Your Current Organism:
Maribacter orientalis
NCBI taxonomy Id: 228957
Other names: Bacteroidetes bacterium KMM 3947, CCUG 48008, DSM 16471, KCTC 12967, KMM 3947, M. orientalis, Maribacter orientalis Nedashkovskaya et al. 2004
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.