Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHJ37298.1 | SHJ37329.1 | SAMN04488007_0126 | SAMN04488007_0127 | DNA polymerase V. | DNA polymerase V. | 0.990 |
SHJ37298.1 | SHJ37354.1 | SAMN04488007_0126 | SAMN04488007_0128 | DNA polymerase V. | Hypothetical protein. | 0.718 |
SHJ37298.1 | SHJ62148.1 | SAMN04488007_0126 | SAMN04488007_0906 | DNA polymerase V. | Hypothetical protein. | 0.749 |
SHJ37298.1 | SHJ66269.1 | SAMN04488007_0126 | SAMN04488007_1027 | DNA polymerase V. | CarboxypepD_reg-like domain-containing protein. | 0.735 |
SHJ37298.1 | SHJ72247.1 | SAMN04488007_0126 | SAMN04488007_1216 | DNA polymerase V. | DNA polymerase III, alpha subunit. | 0.610 |
SHJ37298.1 | SHK60928.1 | SAMN04488007_0126 | SAMN04488007_3380 | DNA polymerase V. | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | 0.922 |
SHJ37298.1 | SHK78966.1 | SAMN04488007_0126 | SAMN04488007_3833 | DNA polymerase V. | Hypothetical protein. | 0.735 |
SHJ37298.1 | SHK83574.1 | SAMN04488007_0126 | SAMN04488007_3959 | DNA polymerase V. | Protein of unknown function. | 0.639 |
SHJ37298.1 | polA | SAMN04488007_0126 | SAMN04488007_1317 | DNA polymerase V. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.655 |
SHJ37298.1 | recA | SAMN04488007_0126 | SAMN04488007_0861 | DNA polymerase V. | Recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.701 |
SHJ37329.1 | SHJ37298.1 | SAMN04488007_0127 | SAMN04488007_0126 | DNA polymerase V. | DNA polymerase V. | 0.990 |
SHJ37329.1 | SHJ37354.1 | SAMN04488007_0127 | SAMN04488007_0128 | DNA polymerase V. | Hypothetical protein. | 0.718 |
SHJ37329.1 | SHJ72247.1 | SAMN04488007_0127 | SAMN04488007_1216 | DNA polymerase V. | DNA polymerase III, alpha subunit. | 0.715 |
SHJ37329.1 | polA | SAMN04488007_0127 | SAMN04488007_1317 | DNA polymerase V. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.438 |
SHJ37329.1 | recA | SAMN04488007_0127 | SAMN04488007_0861 | DNA polymerase V. | Recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.980 |
SHJ37354.1 | SHJ37298.1 | SAMN04488007_0128 | SAMN04488007_0126 | Hypothetical protein. | DNA polymerase V. | 0.718 |
SHJ37354.1 | SHJ37329.1 | SAMN04488007_0128 | SAMN04488007_0127 | Hypothetical protein. | DNA polymerase V. | 0.718 |
SHJ62148.1 | SHJ37298.1 | SAMN04488007_0906 | SAMN04488007_0126 | Hypothetical protein. | DNA polymerase V. | 0.749 |
SHJ62148.1 | SHK60928.1 | SAMN04488007_0906 | SAMN04488007_3380 | Hypothetical protein. | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | 0.955 |
SHJ62148.1 | polA | SAMN04488007_0906 | SAMN04488007_1317 | Hypothetical protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.962 |
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