STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ37651.1Regulator of RNase E activity RraA. (238 aa)    
Predicted Functional Partners:
SHJ76239.1
Allosteric NADP-dependent malic enzyme.
     
 0.760
SHJ37699.1
Sugar phosphate isomerase/epimerase.
 
     0.756
SHK18434.1
Predicted metal-dependent hydrolase, TIM-barrel fold.
    
 0.628
SHJ37167.1
P-hydroxybenzoate 3-monooxygenase.
 
   
 0.576
menA
1,4-dihydroxy-2-naphthoate prenyltransferase; Conversion of 1,4-dihydroxy-2-naphthoate (DHNA) to demethylmenaquinone (DMK); Belongs to the MenA family. Type 1 subfamily.
    
  0.555
SHJ37032.1
Protocatechuate 3,4-dioxygenase, beta subunit.
  
     0.530
SHJ54115.1
acetyl-CoA carboxylase biotin carboxyl carrier protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
     
 0.530
SHJ37067.1
Protocatechuate 3,4-dioxygenase alpha subunit.
  
     0.525
SHK57760.1
Glucosamine-6-phosphate deaminase.
    
 0.502
SHJ36561.1
Catechol 2,3-dioxygenase.
 
   
 0.498
Your Current Organism:
Maribacter aquivivus
NCBI taxonomy Id: 228958
Other names: Bacteroidetes bacterium KMM 3949, CCUG 48009, DSM 16478, KCTC 12968, KMM 3949, M. aquivivus, Maribacter aquivivus Nedashkovskaya et al. 2004
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.