Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHJ33724.1 | SHJ45118.1 | SAMN04488007_0004 | SAMN04488007_0383 | Hypothetical protein. | TonB-dependent receptor. | 0.543 |
SHJ33724.1 | SHJ45150.1 | SAMN04488007_0004 | SAMN04488007_0384 | Hypothetical protein. | Hypothetical protein. | 0.584 |
SHJ33724.1 | SHJ46249.1 | SAMN04488007_0004 | SAMN04488007_0416 | Hypothetical protein. | Hypothetical protein. | 0.519 |
SHJ33724.1 | SHJ76408.1 | SAMN04488007_0004 | SAMN04488007_1348 | Hypothetical protein. | Outer membrane transport energization protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | 0.524 |
SHJ33724.1 | SHJ90694.1 | SAMN04488007_0004 | SAMN04488007_1902 | Hypothetical protein. | Gliding motility-associated C-terminal domain-containing protein. | 0.446 |
SHJ33724.1 | SHK75179.1 | SAMN04488007_0004 | SAMN04488007_3769 | Hypothetical protein. | Protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | 0.524 |
SHJ33724.1 | SHK75507.1 | SAMN04488007_0004 | SAMN04488007_3779 | Hypothetical protein. | TonB family C-terminal domain-containing protein. | 0.524 |
SHJ33724.1 | SHK76526.1 | SAMN04488007_0004 | SAMN04488007_3812 | Hypothetical protein. | Outer membrane transport energization protein TonB. | 0.524 |
SHJ45059.1 | SHJ45085.1 | SAMN04488007_0381 | SAMN04488007_0382 | Two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR. | Two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP. | 0.998 |
SHJ45059.1 | SHJ45118.1 | SAMN04488007_0381 | SAMN04488007_0383 | Two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR. | TonB-dependent receptor. | 0.523 |
SHJ45059.1 | SHJ45150.1 | SAMN04488007_0381 | SAMN04488007_0384 | Two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR. | Hypothetical protein. | 0.469 |
SHJ45085.1 | SHJ45059.1 | SAMN04488007_0382 | SAMN04488007_0381 | Two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP. | Two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR. | 0.998 |
SHJ45085.1 | SHJ45118.1 | SAMN04488007_0382 | SAMN04488007_0383 | Two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP. | TonB-dependent receptor. | 0.518 |
SHJ45085.1 | SHJ45150.1 | SAMN04488007_0382 | SAMN04488007_0384 | Two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP. | Hypothetical protein. | 0.467 |
SHJ45118.1 | SHJ33724.1 | SAMN04488007_0383 | SAMN04488007_0004 | TonB-dependent receptor. | Hypothetical protein. | 0.543 |
SHJ45118.1 | SHJ45059.1 | SAMN04488007_0383 | SAMN04488007_0381 | TonB-dependent receptor. | Two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR. | 0.523 |
SHJ45118.1 | SHJ45085.1 | SAMN04488007_0383 | SAMN04488007_0382 | TonB-dependent receptor. | Two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP. | 0.518 |
SHJ45118.1 | SHJ45150.1 | SAMN04488007_0383 | SAMN04488007_0384 | TonB-dependent receptor. | Hypothetical protein. | 0.916 |
SHJ45118.1 | SHJ46249.1 | SAMN04488007_0383 | SAMN04488007_0416 | TonB-dependent receptor. | Hypothetical protein. | 0.519 |
SHJ45118.1 | SHJ76408.1 | SAMN04488007_0383 | SAMN04488007_1348 | TonB-dependent receptor. | Outer membrane transport energization protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | 0.524 |
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