STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ47429.1Predicted Zn-dependent peptidase. (690 aa)    
Predicted Functional Partners:
SHJ47399.1
Predicted Zn-dependent peptidase.
     0.995
SHJ88791.1
Ferredoxin subunit of nitrite reductase or a ring-hydroxylating dioxygenase.
   
 0.986
SHJ42046.1
4Fe-4S binding domain-containing protein.
  
   0.883
SHK14434.1
4Fe-4S dicluster domain-containing protein.
  
   0.883
SHJ76019.1
Cytochrome c oxidase subunit 2.
   
 0.859
SHJ76049.1
Cytochrome c oxidase subunit 1; Belongs to the heme-copper respiratory oxidase family.
   
 0.856
SHJ76480.1
Cytochrome c oxidase subunit 3.
   
  0.831
SHJ76516.1
Cytochrome c oxidase subunit 3.
   
  0.831
atpH
ATP synthase F1 subcomplex delta subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
   
 
 0.788
atpA
ATP synthase F1 subcomplex alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.
   
 
 0.764
Your Current Organism:
Maribacter aquivivus
NCBI taxonomy Id: 228958
Other names: Bacteroidetes bacterium KMM 3949, CCUG 48009, DSM 16478, KCTC 12968, KMM 3949, M. aquivivus, Maribacter aquivivus Nedashkovskaya et al. 2004
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.