STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ63869.1Hypothetical protein. (144 aa)    
Predicted Functional Partners:
SHK37170.1
Outer membrane porin, OprD family.
    
 
 0.578
SHJ84679.1
Tat (twin-arginine translocation) pathway signal sequence.
   
   0.516
SHK29943.1
40-residue YVTN family beta-propeller repeat-containing protein.
   
   0.516
SHJ50944.1
Outer membrane protein OmpA.
   
   0.475
SHJ58385.1
WD40-like Beta Propeller Repeat.
   
   0.475
SHJ67139.1
Outer membrane protein OmpA.
   
   0.475
SHJ76408.1
Outer membrane transport energization protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
   
 
 0.475
SHJ77337.1
Outer membrane protein OmpA.
   
   0.475
SHJ78858.1
WD40-like Beta Propeller Repeat.
   
   0.475
SHJ79136.1
Hypothetical protein.
   
   0.475
Your Current Organism:
Maribacter aquivivus
NCBI taxonomy Id: 228958
Other names: Bacteroidetes bacterium KMM 3949, CCUG 48009, DSM 16478, KCTC 12968, KMM 3949, M. aquivivus, Maribacter aquivivus Nedashkovskaya et al. 2004
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.