STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ84758.1Glycosyl hydrolases family 16. (395 aa)    
Predicted Functional Partners:
SHJ86176.1
Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family.
  
  
  0.808
SHJ85988.1
Glycosyl hydrolases family 16.
  
  
  0.807
SHJ85363.1
Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family.
  
  
  0.799
SHJ85076.1
Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family.
  
  
  0.795
SHJ86514.1
Agarase.
  
  
  0.785
SHJ84703.1
Uncharacterized membrane protein.
 
     0.783
SHJ85303.1
Glycosyl hydrolases family 32 N-terminal domain-containing protein.
  
     0.732
SHJ84918.1
Protein of unknown function.
 
  
  0.707
SHJ84679.1
Tat (twin-arginine translocation) pathway signal sequence.
 
     0.701
SHJ85433.1
Stress responsive A/B Barrel Domain.
  
     0.676
Your Current Organism:
Maribacter aquivivus
NCBI taxonomy Id: 228958
Other names: Bacteroidetes bacterium KMM 3949, CCUG 48009, DSM 16478, KCTC 12968, KMM 3949, M. aquivivus, Maribacter aquivivus Nedashkovskaya et al. 2004
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.