STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ92197.1Amidohydrolase family protein; Manually curated. (530 aa)    
Predicted Functional Partners:
SHJ92225.1
Zinc carboxypeptidase.
 
     0.794
SHK61737.1
Xaa-Pro aminopeptidase.
  
     0.690
SHK62325.1
Protein of unknown function.
  
     0.616
SHJ34316.1
Hypothetical protein; Manually curated.
  
 
 0.604
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
  
 
 0.604
SHJ73112.1
Histidine ammonia-lyase.
  
  
 0.572
SHK13829.1
Carboxypeptidase C (cathepsin A).
 
     0.512
SHJ61000.1
CubicO group peptidase, beta-lactamase class C family.
  
     0.459
SHJ92248.1
Two-component sensor histidine kinase, contains HisKA and HATPase domains.
       0.455
SHJ57052.1
Carboxypeptidase C (cathepsin A).
 
     0.454
Your Current Organism:
Maribacter aquivivus
NCBI taxonomy Id: 228958
Other names: Bacteroidetes bacterium KMM 3949, CCUG 48009, DSM 16478, KCTC 12968, KMM 3949, M. aquivivus, Maribacter aquivivus Nedashkovskaya et al. 2004
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.