Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHJ80916.1 | SHK12925.1 | SAMN04488007_1520 | SAMN04488007_2104 | Hypothetical protein. | Hypothetical protein. | 0.484 |
SHJ91530.1 | SHK12925.1 | SAMN04488007_1933 | SAMN04488007_2104 | Hypothetical protein. | Hypothetical protein. | 0.694 |
SHJ91530.1 | SHK80375.1 | SAMN04488007_1933 | SAMN04488007_3874 | Hypothetical protein. | Hypothetical protein. | 0.772 |
SHK12877.1 | SHK12900.1 | SAMN04488007_2102 | SAMN04488007_2103 | ATP-dependent DNA helicase RecQ. | Predicted ATPase. | 0.823 |
SHK12877.1 | SHK12925.1 | SAMN04488007_2102 | SAMN04488007_2104 | ATP-dependent DNA helicase RecQ. | Hypothetical protein. | 0.631 |
SHK12877.1 | SHK12950.1 | SAMN04488007_2102 | SAMN04488007_2105 | ATP-dependent DNA helicase RecQ. | Protein of unknown function. | 0.469 |
SHK12877.1 | fmt | SAMN04488007_2102 | SAMN04488007_2101 | ATP-dependent DNA helicase RecQ. | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | 0.823 |
SHK12877.1 | murA | SAMN04488007_2102 | SAMN04488007_2106 | ATP-dependent DNA helicase RecQ. | UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily. | 0.427 |
SHK12900.1 | SHK12877.1 | SAMN04488007_2103 | SAMN04488007_2102 | Predicted ATPase. | ATP-dependent DNA helicase RecQ. | 0.823 |
SHK12900.1 | SHK12925.1 | SAMN04488007_2103 | SAMN04488007_2104 | Predicted ATPase. | Hypothetical protein. | 0.633 |
SHK12900.1 | SHK12950.1 | SAMN04488007_2103 | SAMN04488007_2105 | Predicted ATPase. | Protein of unknown function. | 0.469 |
SHK12900.1 | fmt | SAMN04488007_2103 | SAMN04488007_2101 | Predicted ATPase. | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | 0.823 |
SHK12900.1 | murA | SAMN04488007_2103 | SAMN04488007_2106 | Predicted ATPase. | UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily. | 0.434 |
SHK12925.1 | SHJ80916.1 | SAMN04488007_2104 | SAMN04488007_1520 | Hypothetical protein. | Hypothetical protein. | 0.484 |
SHK12925.1 | SHJ91530.1 | SAMN04488007_2104 | SAMN04488007_1933 | Hypothetical protein. | Hypothetical protein. | 0.694 |
SHK12925.1 | SHK12877.1 | SAMN04488007_2104 | SAMN04488007_2102 | Hypothetical protein. | ATP-dependent DNA helicase RecQ. | 0.631 |
SHK12925.1 | SHK12900.1 | SAMN04488007_2104 | SAMN04488007_2103 | Hypothetical protein. | Predicted ATPase. | 0.633 |
SHK12925.1 | SHK12950.1 | SAMN04488007_2104 | SAMN04488007_2105 | Hypothetical protein. | Protein of unknown function. | 0.639 |
SHK12925.1 | SHK31492.1 | SAMN04488007_2104 | SAMN04488007_2719 | Hypothetical protein. | Putative zinc-or iron-chelating domain-containing protein. | 0.596 |
SHK12925.1 | SHK79706.1 | SAMN04488007_2104 | SAMN04488007_3855 | Hypothetical protein. | Hypothetical protein. | 0.485 |
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