STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK19669.1YHYH protein. (443 aa)    
Predicted Functional Partners:
SHK19699.1
Hypothetical protein.
 
     0.945
SHK19731.1
Hypothetical protein.
 
     0.939
SHK19510.1
Outer membrane protein.
 
     0.733
SHK16374.1
SMP-30/Gluconolaconase/LRE-like region-containing protein.
  
    0.710
SHK19542.1
HlyD family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
     0.706
SHK19576.1
Putative ABC transport system ATP-binding protein.
       0.668
SHK19602.1
Putative ABC transport system permease protein; Manually curated.
       0.668
SHK19642.1
Histidine kinase.
       0.668
SHK20114.1
MORN repeat variant.
 
     0.656
SHJ67081.1
C-terminal domain of CHU protein family protein.
  
     0.652
Your Current Organism:
Maribacter aquivivus
NCBI taxonomy Id: 228958
Other names: Bacteroidetes bacterium KMM 3949, CCUG 48009, DSM 16478, KCTC 12968, KMM 3949, M. aquivivus, Maribacter aquivivus Nedashkovskaya et al. 2004
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.